启动子与基因表达分析文献

2010/08/17 13:01:51

(1)诱变

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Seraphin B, Kandels-Lewis S. An efficient PCR mutagenesis strategy without gel purification step that is amenable to automation. Nucl Acids Res, 1996, 24: 3276-3277

(2)GFP

Davis S J, Vierstra R D. Soluble, highly fluorescent variants of green fluorescent protein (GFP) for use in higher plants. Plant Mol Biol, 1998, 36: 521-528

Patterson GH, Knoble SM, Sharif WD, Kain SR, Piston DW. Use of the green fluorescent protein and its mutants in fluorescence microscopy. Biophys J, 1997, 73; 2782-2790

Furtado A, Henry RJ. Measurement of green fluorescent protein in single cells by image analysis. Anal Biochem, 2002, 310: 84-92

Haseloff J, Siemering KR, Prasher DC, Hodge S. Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly. Proc Natl Acad Sci USA, 1997, 94: 2122-2127

(3)GUS

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(4)LUC

Sherf BA, Wood KV. Firefly luciferase engineered for improved genetic reporting. Promega Notes, 1994, 49: 14-21

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(5)Northern blot

Barbu V, Dautry F. Northern blot normalization with a 28S rRNA oligonucleotide probe. Nucl Acids Res, 1989, 17: 7115

De Leeuw WJF, Slagboom PE, Vijg J. Quantitative comparison of RNA levels in mammalian tissues: 28S ribosomal RNA level as an accurate internal standard. Nucl Acids Res, 1989, 17: 10137-10138

(6)启动子

Benfey P N, Ren L, Chua N H. The CaMV 35S enhancer contains at least two domains which can confer different developmental and tissue-specific expression patterns. EMBO J, 8: 2195-2202

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Van der Geest AH, Hall TC. A 68 bp element of the phaseolin promoter functions as a seed-specific enhancer. Plant Mol Biol, 1996, 32: 579-588

Mandal A, Sandgren M, Holmström K-O, Gallois P, Palva ET. 1995. Identification of Arabidopsis thaliana _sequences responsive to low temperature and abscisic acid by T-DNA tagging and _in vivo gene fusion. Plant Molecular Biology Reporter, 13, 243–254

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Li XQ, Zhang MD, Brown GG. Cell-specific expression of plant mitochondrial transcripts in maize seedlings. Plant Cell, 1996, 8; 1961-1975

Watanabe K, Okada K. Two discrete cis elements control the abaxial side-specific expression of the FILAMENTOUS FLOWER gene in Arabidopsis. The Plant Cell, 2003, 15: 2592-2602

Sheldon C C, Bonn AB, Dennis E S, Peacock W J. Different regulatory regions are required for the vernalization-induced repression of FLOWERING LOCUS C and for the epigenetic maintenance of repression. The Plant Cell, 2002, 14: 2527-2537

Dolferus R, Jacobs M, Peacock W J, Dennis E S. Differential interactions of promoter elements in stress response of the Arabidopsis Adh gene. Plant Physiol, 1994, 105: 1075-1087

Dietrich R A, Radke S E, Harada J J. Downstream DNA sequences are required to activate a gene expressed in the root cortex of embryos and seedlings. The Plant Cell, 1992, 4: 1372-1382

Bastos MM, Begum D, Kalkan FA, Battraw MJ, Hall TC. Positive and negative cis-acting DNA domains are required for spatial and temporal regulation of gene expression by a seed storage protein promoter. EMBO J, 1991, 10: 1469-1479

Graber J H, Cantor C R, Mohr, Smith T F. In silico detection of control signals: mRNA 3’-end-processing sequences in diverse species. Proc Natl Acad Sci USA, 1999, 96: 14055-14060

Ch’ng JLC, Shoemaker DL, Schlmmel P, Holmes EW. Reversal of creatine kinase translational expression by 3’ untranslated sequences. Science, 1990, 248: 1003-1006

Chol OR, Engel JD. A 3’ enhancer is required for temporal and tissue-specific transcriptional activation of the chicken adult beta-globin gene. Nature, 1986, 323: 731-734

Dean C, Favreau M, Bond-Nutter D, Bedbrook J, Dunsmuir P. Sequences downstream of translation start regulate quantitative expression of two petunia rbcS genes. Plant Cell, 1989, 1: 201-208

Jackson RJ, Standart N. Do the poly(A) tail and 3’ untranslated region control mRNA translation? Cell, 1990, 62: 15-24

Munroe D, Jackson A. mRNA poly(A) tail, a 3’ enhancer of translation initiation. Mol Cell Biol, 1990, 10: 3441-3455

Ohl S, Hedrick SA, Chory J, Lamb CJ. Functional properties of a phenylalanine ammonia-lyase promoter from Arabidopsis. Plant Cell, 1990, 2: 837-848

Yamamoto YT, Talor CG, Acedo GN, Cheng C-L, Conkling MA. Characterization of cis-acting sequences regulating root-specific gene expression in tobacco. Plant Cell, 1991, 3: 371-382

Nelson D E, Raghothama K G, Singh N K, Hasegawa P M, Bressan R A. Analysis of structure and transcriptional activation of an OSM gene. Plant Mol Biol, 1992,

David Thirkettle-Watts, Tulene C. McCabe, Rachel Clifton, Carolyn Moore, Patrick M. Finnegan, David A. Day and James Whelan. Analysis of the Alternative Oxidase Promoters from Soybean. Plant Physiology 133:1158-1169 (2003)

Sieburth LE, Meyerowitz EM. 1997. Molecular dissection of the AGAMOUS control region shows that cis elements for spatial regulation are located intragenically. The Plant Cell 9, 355–365

Liu HX, Filipowicz W. Mapping of branchpoint nucleotides in mutant pre-mRNAs expressed in plant cells. Plant J, 1996, 9: 381-389

Shiina T, Nishii A, Toyoshima Y, Bogorad L. Identification of promoter elements involved in the cytosolic Ca2+-mediated photoregulation of maize cab-m1 expression. Plant Physiol, 1997, 115: 477-483  (transient expression assays)

Tim Thurau, Sirak Kifle, Christian Jung and Daguang Cai. The promoter of the nematode resistance gene Hs1pro−1 activates a nematode-responsive and feeding site-specific gene expression in sugar beet (Beta vulgaris L.) and Arabidopsis thaliana. Plant Mol Biol, 1992, 52: 643-660

Fusada N, Masuda T, Kuroda H, Shimada H, Ohta H, Takamiya K-I. Identification of a novel cis-element exhibiting cytokinin-dependent protein binding in vitro in the 5′-region of NADPH-protochlorophyllide oxidoreductase gene in cucumber. Plant Mol Biol, 2005, 59: 631-645

Ng D W-K, Chandrasekharan MB, Hall TC. The 5′ UTR negatively regulate quantitative and spatial expression from the ABI3 promoter. Plant Mol Biol, 2004, 54: 25-38

Z. B. Liu, T. Ulmasov, X. Shi, G. Hagen and T. J. Guilfoyle. Soybean GH3 Promoter Contains Multiple Auxin-Inducible Elements. THE PLANT CELL, 1994, Vol 6, Issue 5 645-657

Ulmasov T, Murfett J, Hagen G, Guilfoyle T J. Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. Plant Cell, 1997, 9: 1963-1971

Diener A C, Li H, Zhou W, Whoriskey W J, Nes W D, Fink G R. Sterol methyl-transferase 1 controls the level of cholesterol in plants. Plant Cell, 2000, 12: 853-870

Friml J, Vieten A, Sauer M, Weijers D, Schwarz H, Hamann T, Offringa R, Jürgens G(2003). Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature, 426: 147~153

Blilou I, Xu J, Wildwater M, Willemsen V, Paponov I, Friml J, Heidstra R, Aida M, Palme K, Scheres B. The PIN auxin efflux facilitatior network controls growth and patterning in Arabidopsis roots. Nature, 2005, 433: 39-44

(7)启动子陷阱(捕获)

Topping J F, Lindsey K. Promoter trap markers differentiated structural and positional components of polar development in Arabidopsis. The Plant Cell, 1991, 9: 1713-1725

Topping JF, Agyeman F, Henricot B, Lindsey K. 1994. Identification of molecular markers of embryogenesis in Arabidopsis thaliana by promoter trapping. The Plant Journal 5, 895–903

Topping JF, Lindsey K. 1997. Promoter trap markers differentiate structural and positional components of polar development in Arabidopsis. The Plant Cell 9, 1713–1725

Topping JF, Wei W, Lindsey K. 1991. Functional tagging of regulatory elements in the plant genome. Development 112, 1009–1019

(8)确定启动子的起始(determine the onset of the respective promoter activities)

Yamaizumi M, Mekada E, Uchida T, Okada Y. One molecule of diphtheria toxin fragment A introduced into a cell can kill the cell. Cell, 1978, 15: 245-250

Day CD, Galagoci BF, Irish VF. Genetic ablation of petal and stamen primordial to elucidate cell interactions during floral development. Development, 1995, 121: 2887-2895

Twell D. Diphtheria toxin-mediated cell ablation in developing pollen: vegetative cell ablation blocks generative cell migration. Prtoplasma, 1995, 187: 144-154

Lauri A, Xing S, Heidmann I, Saedler H, Zachgo S. The pollen-specific DEFH125 promoter from Antirrhinum is bound in vivo by the MADS-box proteins DEFICIENS and GLOBOSA. Planta, 2006, 224: 61-71